Hidden Markov Models
A Markov chain assumes you can see the state. Often you cannot: you see something the state produces.
Markets are the standard example. There is arguably a "regime" (calm, stressed, trending) that is never announced. What you observe is returns and volumes, which the regime generates.
The pieces
Hidden states , unobserved.
Transition matrix , how the regime evolves.
Emission matrix , what each state tends to produce.
Initial distribution .
A two-state market model might have a calm state emitting small returns and a volatile state emitting large ones, with the transition matrix encoding that regimes persist.
The three questions
Filtering: where am I now? Given observations so far, what is the probability distribution over current states? Solved by the forward algorithm, and it is the question a live trading system asks.
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